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BLAST 2.2.21 released PDF Print E-mail
Written by Administrator   
Tuesday, 28 July 2009 19:44


The 2.2.21 version of BLAST has been released. With this release the new BLAST+ command-line applications are being promoted. The BLAST+ applications have a number of advantages over the older applications that include working more robustly with long sequences and a new type of masking (database masking). For details see this PDF.

The new applications can be downloaded from this ftp site These applications have been built with the NCBI C++ toolkit. Changes from the last release are listed below.

The older C toolkit applications (e.g., blastall) are still available at this ftp site
Changes from the last release are listed below.

Please send questions or comments to This e-mail address is being protected from spambots. You need JavaScript enabled to view it

c toolkit binary changes:

 

Last Updated on Tuesday, 28 July 2009 19:52
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International Society for Biocuration: First election of the executive board PDF Print E-mail
Written by Administrator   
Tuesday, 28 July 2009 02:08

We are ready for the first election of the executive board. The complete executive board shall be composed of nine (9) members, each with a 2-year term. The interim executive board remains for another year to ensure proper transition and six (6) new members will be elected this year.

The election will take place as follows:

  • A nominating committee composed of 5 persons will be put in place to oversee the electoral process, in particular to provide advice on the candidacies for members of the Executive Committee and proposal of the final list of candidates. If you would like to participate in the nominating committee, please let the current ISB executive board know by emailing This e-mail address is being protected from spambots. You need JavaScript enabled to view it
  • During the month of August (August 1st to the 31st), members of the ISB wishing to run for a position in the executive board should propose their candidacy to the Nominating Committee. Send a message with your intention to run as well as a short biographic sketch to This e-mail address is being protected from spambots. You need JavaScript enabled to view it
  • The nominating process will end on August 31, 2009.
  • During the first two weeks of September, the Nominating committee will review the candidacies and make them available to the ISB membership.
  • The election will take place from September 15 to the 22nd through an online process (more details will soon follow).
  • We remind you that only members who have paid their registration fees by the time of the election (before September 14 to allow for processing of the payment) will be entitled to vote.
Last Updated on Tuesday, 28 July 2009 02:19
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Plant pathogen genomics and bioinformatics PDF Print E-mail
Written by Administrator   
Saturday, 25 July 2009 18:35
A postdoctoral position in microbial plant pathogen genomics and bioinformatics is available in the laboratory of C. R. Buell in the Department of Plant Biology at Michigan State University.
The candidate will work on projects involving plant pathogen genomics and bioinformatics

For further information: www.bioinfo.com.br
Last Updated on Sunday, 26 July 2009 18:46
 
First version of GallusReactome now publicly available PDF Print E-mail
Written by Administrator   
Sunday, 26 July 2009 18:39
Version 1 of the GallusReactome Knowledgebase has been released at http://gallus.reactome.org.
GallusReactome is a free, online, open-source, curated resource of core pathways and reactions in chicken biology. Information is authored by expert biological researchers, maintained by the GallusReactome editorial staff and cross-referenced to the NCBI Entrez Gene, Ensembl and UniProt databases, the KEGG and ChEBI small molecule databases, PubMed, and the Gene Ontology (GO).
New content. This first release features pathways of energy metabolism (carbohydrate and pyruvate metabolism, the TCA cycle) linked reactions of amino acid and lipid metabolism, together with an extensive annotation of the process of DNA repair. Data are drawn from the extensive experimental studies of these aspects of avian biology, supplemented with orthology projections from mammalian systems. Work is now underway to annotate telomere replication as well as porphyrin and nucleotide metabolism.
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EMBOSS 6.1.0 release now available PDF Print E-mail
Written by Administrator   
Wednesday, 15 July 2009 16:18

Announce from the creator of EMBOSS:

A new version of EMBOSS (6.1.0) is now available for download from our ftp server:

ftp://emboss.open-bio.org/pub/EMBOSS/


If you use any of the EMBASSY packages (e.g. PHYLIP, VIENNA etc) then, as usual, remember to re-download and compile those too.

A new version of the mEMBOSS, the Windows port, is also available from:

Last Updated on Sunday, 26 July 2009 19:29
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