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DNALinux is a Live Linux for bioinformatic use. Just boot your computer and have several bioinformatic software. Download and use it free.

 
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Software: DNALinux VD Python for bioinformatics available PDF Print E-mail
Written by Administrator   
Thursday, 11 June 2009 03:28
DNALinux Virtual Desktop Py4Bio is ready!. This edition is called Py4Bio because is the Linux distribution included in the book Python for Bioinformatics (http://www.tinyurl.com/biopython). Including a Virtual Machine in a book allows the reader to have the same environment used by the author so he could focus on following the examples with confidence.

This release is based on the last Xubuntu "stable" or "LTS" version (8.04). It has all the programs in Xubuntu plus both desktop and server bioinformatics applications. As a server DNALinux includes BLAST, Primer3Plus and MySQL. Full list of pre-installed bioinformatics software is available here: [link].

Since this distribution is a 12Gb VMWare Virtual Machine, it is compressed with 7z (to 2.3Gb) and uploaded using bittorrent protocol. Torrent file is available from the download page: http://www.dnalinux.com/download.php. Please seed the image if you can.
 
New articles in BMC Bioinformatics, June 2009 PDF Print E-mail
Written by Administrator   
Thursday, 11 June 2009 03:20

The following new articles have just been published in BMC Bioinformatics

 

Software
PolyMin: software for identification of the minimum number of polymorphisms required for haplotype and genotype differentiation
Frei UK, Wollenweber B, Lubberstedt T
BMC Bioinformatics 2009, 10:176 (10 June 2009)
[Abstract] [Provisional PDF]
Database
Text-mining of PubMed abstracts by natural language processing to create a public knowledge base on molecular mechanisms of bacterial enteropathogens
Zaremba S, Ramos-Santacruz M, Hampton T, Shetty P, Fedorko J, Whitmore J, Greene JM, Perna NT, Glasner JD, Plunkett G, Shaker M, Pot D
BMC Bioinformatics 2009, 10:177 (10 June 2009)
[Abstract] [Provisional PDF]
 
News for ICBO Participants PDF Print E-mail
Written by Virginia Gonzalez   
Monday, 01 June 2009 22:22

1. Submission of camera-ready copy
2. Biomedical Ontology Jobs Service
3. Call for Software Demonstrations

1. Submission of camera-ready copy (deadline June 10).

For those of you who are authors of accepted papers (4 pages) or posters (1-page descriptions): please be sure to follow the instructions for submission of camera-ready copy provided here: http://icbo.buffalo.edu/Guidelines.pdf.
To allow for uniform formatting of the conference proceedings volume, all papers and poster descriptions must be submitted in Microsoft Word format.

Read more...
 
NCBI News May 2009 PDF Print E-mail
Written by Virginia Gonzalez   
Monday, 01 June 2009 22:31

The May 2009 issue of the NCBI News is on the NCBI Bookshelf

This month's issue has a featured data section on 2009 H1N1 Influenza Sequences. It provides a brief tutorial on searching and obtaining the latest H1N1 sequences in NCBI's repository. The Featured Resource article this month is entitled, "Protein Multiple Alignment Tools Web Service."

Last Updated on Thursday, 11 June 2009 03:20
 
NETTAB 2009 Workshop PDF Print E-mail
Written by Virginia Gonzalez   
Friday, 29 May 2009 19:08

NETTAB 2009 Workshop

"Technologies, Tools and Applications for Collaborative and Social Bioinformatics Research and Development" with a Special Session on: "Methods and Tools for RNA Structure and Functional Analysis"

June 10-13, 2009
Department of Computer Science, University of Catania, Italy

http://www.nettab.org/2009/


KEYNOTE TALKS

RNA WikiProject: Community annotation of RNA families

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